Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891819.1_cds_XP_016446704.1_41536
CDS Infomation

[gene=LOC107771772] [db_xref=GeneID:107771772] [protein=lysine-specific demethylase JMJ706-like] [protein_id=XP_016446704.1] [location=join(72608..72667,75639..75963,76885..77041,77228..77447,77701..77754,77837..77916,78003..78280,78369..78758,78977..79182,79489..79593,80134..80250)] [gbkey=CDS]
Sequence

ATGTCAGTTCCGGGAATAAGGTTTTCAGGCACAACAATGATGAGATCAAAAAGCAAGAAA
GCTGATGCAGGGAATGGATTATTAAGTGAAAAAAGAATTCCAGCAAAACGTAAGCGTAAA
GATGTTTCGAATTGGGATACAGCATTTTCTTGTGATGTTCAGAAAGTAACCAAAACAAAA
CCTGCAAGAGAAGTGAAGAAATCTTGTTATCGTAGCCCTTCTCCTGTAAAAGTTTCTCAA
AAAAGGAAAGTCAGTCAGCTTAGTACGAGTGAATTTGATTGGATTGATACGATCAAAGAA
TGCCCAGTATATCATCCATCGAAGGAAGAATTTGAGGATCCCTTGGCTTATGTGCAGAAA
ATTGCTCTTGAAGCATCAAAATTTGGCATTTGTAAGGTTGTCTCTCCTCTGGGATCTTCT
GTTCCACCGGGAGCAGTGTTGATGAAAGAGCAAAAAGGTTTTAAGTTTACCACTAAGCTG
CAACCTCTGCGACTTGCTGAATGGAATAACAACGATAAGATCTCCTTCTTCATGAGAGGA
AGAAATTATACTATCCGTGATTTTGAGATAATGGCAAACAAGGCAACAGCTCGTAGATAC
TGTATATCTGGATGCCTTCCTCCTGCATATGTGGAAAAGGAATTCTGGAAAGAAATGGTA
CATGCAAAGAAAGGAATGGTTGAGTATGGAATCAATATAGATGGTAGTGCCTTCTCAAGC
ACTTTCAGCGATCCTCTTGGAAGTAGCAAATGGAATTTCAAGATACTACCTCGGCTGCGA
AGATCCACATTACGCTTGATAGTAAACGAAATCCCGGGAGTAACTGAACCCATGCTATAC
ATTGGGATGCTATTTAGTATGTTTGCGTGGCATGTGGAGGATCATTACCTCTATAGCATT
AATTATCATCATTGTGGGGCGCCCAAAACTTGGTATGGAGTTCCTGGGCATGCAGCTGTT
CAGTTTGAGAATCTTATTCGGCATCATGTCTACAATGAGGAAATTCTATCAGAAAATGGG
CTCAATGGAGTCTTTAACGTTCTTCAAGAGAAAACAACAACGGTTTCTCCAAAGATTTTG
CTGCAATATGATGTCCCCGTTTACAAGGCTGTGCAAATGCCAGGGGAGTTTGTTATTACC
TTCCCTAGAGCATACCATTCAGGATTTAGTCATGGCTTTAACTGTGGCGAGGCTGTGAAT
TTTGCAATTGGTGAATGGTTTCCATTTGGAGCTGAAGCATGTGAACGTTATGCTCTTCTT
GGCAAGGTTCCAATTATTCCTTATGAAGAGCTCCTATGTGCAGAAGCAATGAGTCTCCCA
GAGTCTTTAACTCACATACCTTATTGCTCAGCAGATTTAGTCTCCCTTCGTTGTGTAATG
ACTTCATTTTCATGCCTATTGAGATCGTACCACCATGCCCGCTGGTGCTTGAAGAAGTTT
AGAACTTCACTTAGAATGTGTTTAAAACCTCGAGGATCATCCGTCTGCGTCCTCTGTAGA
CGACTATGTTACGTGGCATACATTGAATGCAAATGTTTCGATGGTCCCATATGCCTTTTT
CATGATTTTGAATCTTTTAACTGTCTGTGTGGAAGTAGCTGCAGCCTCTTTGTTACAGAG
GACATTTCAAAAATGGAAGTTGTTGCACAGATGTTTGAGGCTGAGGAAGGAATGCTCTAT
GAGGTTGAGCAAAAAATGAAGTCTGAACCTTACTTGTGGATGCAGACCTTATCTTCGTGC
GTGAAAGGAAAATATAGTCCATATTGCGAGATAATGCCAATAAATACTCAAAACAATGAG
GCCACTTGTATAAAGATGTCCAGGATCGGAAGAACTTCTGCTCTAGACAAGCAAAGGAGG
AATAAGAAGAAAAAGTGTGACAGAGAATCAATCGAGCGTGAAAGCGAAGGAATGTATCCC
TGGAGCTCTATGCTTGTCAACACTCAACAGCAAGAAAATGATACCACGGAAAATAAAGTC
TCAAAGATATAG

Peptide Sequence

PEP ID

XP_016446704.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ706-like [Nicotiana tabacum]
Sequence

MSVPGIRFSGTTMMRSKSKKADAGNGLLSEKRIPAKRKRKDVSNWDTAFSCDVQKVTKTK
PAREVKKSCYRSPSPVKVSQKRKVSQLSTSEFDWIDTIKECPVYHPSKEEFEDPLAYVQK
IALEASKFGICKVVSPLGSSVPPGAVLMKEQKGFKFTTKLQPLRLAEWNNNDKISFFMRG
RNYTIRDFEIMANKATARRYCISGCLPPAYVEKEFWKEMVHAKKGMVEYGINIDGSAFSS
TFSDPLGSSKWNFKILPRLRRSTLRLIVNEIPGVTEPMLYIGMLFSMFAWHVEDHYLYSI
NYHHCGAPKTWYGVPGHAAVQFENLIRHHVYNEEILSENGLNGVFNVLQEKTTTVSPKIL
LQYDVPVYKAVQMPGEFVITFPRAYHSGFSHGFNCGEAVNFAIGEWFPFGAEACERYALL
GKVPIIPYEELLCAEAMSLPESLTHIPYCSADLVSLRCVMTSFSCLLRSYHHARWCLKKF
RTSLRMCLKPRGSSVCVLCRRLCYVAYIECKCFDGPICLFHDFESFNCLCGSSCSLFVTE
DISKMEVVAQMFEAEEGMLYEVEQKMKSEPYLWMQTLSSCVKGKYSPYCEIMPINTQNNE
ATCIKMSRIGRTSALDKQRRNKKKKCDRESIERESEGMYPWSSMLVNTQQQENDTTENKV
SKI

Transcript Sequence

Gene sequence data has not been registered.